Cubicratic 2.1 Mac OS

Software download library for vintage Mac software. Getting a beige Mac up and running can be very challenging these days. Older software updates are very hard to find, and of course you need Stuffit to download Stuffit:) This web page is my attempt at getting everything you could ever need together in one place. Jun 03, 2014 The last version of OS X officially supported by Apple on the original 2006 Mac Pro MA356LL/A (MacPro1,1), 2007 Mac Pro (8-core) MA1186/A (MacPro2,1) and Xserve (Late 2006) MA409LL/A (Xserve1,1) models was OS X 10.7 Lion, and then only when booted with a 32-bit kernel due to their EFI32 firmware. Officially, the operating system that was available on that Mac at the time that you bought it is the oldest version of macOS that can run on that Mac. It's likely that an older OS won't include.

Cubicratic 2.1 Mac Os Pro
Mac Os Versions

This directory contains binaries for a base distribution and packages to run on Mac OS X (release 10.6 and above). Mac OS 8.6 to 9.2 (and Mac OS X 10.1) are no longer supported but you can find the last supported release of R for these systems (which is R 1.7.1) here. Releases for old Mac OS X systems (through Mac OS X 10.5) and PowerPC Macs can be found in the old directory.

Note: CRAN does not have Mac OS X systems and cannot check these binaries for viruses.Although we take precautions when assembling binaries, please use the normal precautions with downloaded executables.

Package binaries for R versions older than 3.2.0 are only available from the CRAN archive so users of such versions should adjust the CRAN mirror setting (https://cran-archive.r-project.org) accordingly.

R 4.0.5 'Shake and Throw' released on 2021/03/31

Please check the SHA1 checksum of the downloaded image to ensure that it has not been tampered with or corrupted during the mirroring process. For example type
openssl sha1 R-4.0.5.pkg
in the Terminal application to print the SHA1 checksum for the R-4.0.5.pkg image. On Mac OS X 10.7 and later you can also validate the signature using
pkgutil --check-signature R-4.0.5.pkg

Latest release:

R-4.0.5.pkg (notarized and signed) SHA1-hash: 2f683b3c10f1a9aad927236636abef02285b6132 (ca. 85MB)	R 4.0.5 binary for macOS 10.13 (High Sierra) and higher, signed and notarized package. Contains R 4.0.5 framework, R.app GUI 1.74 in 64-bit for Intel Macs, Tcl/Tk 8.6.6 X11 libraries and Texinfo 6.7. The latter two components are optional and can be ommitted when choosing 'custom install', they are only needed if you want to use the `tcltk` R package or build package documentation from sources. Note: the use of X11 (including `tcltk`) requires XQuartz to be installed since it is no longer part of OS X. Always re-install XQuartz when upgrading your macOS to a new major version. Also please do not install beta versions of XQuartz (even if offered). This release supports Intel Macs, but it is also known to work using Rosetta2 on M1-based Macs. Native Apple silicon binary is expected for R 4.1.0 if support for Fortran sabilizes, for experimental builds and updates see mac.R-project.org. Important: this release uses Xcode 12.4 and GNU Fortran 8.2. If you wish to compile R packages from sources, you will need to download GNU Fortran 8.2 - see the tools directory.
NEWS (for Mac GUI)	News features and changes in the R.app Mac GUI
Mac-GUI-1.74.tar.gz SHA1-hash: 2c791fd1fd2d8f90b0887c1f9541882200a6eab8	Sources for the R.app GUI 1.74 for Mac OS X. This file is only needed if you want to join the development of the GUI, it is not intended for regular users. Read the INSTALL file for further instructions.
Note: Previous R versions for El Capitan can be found in the el-capitan/base directory. Binaries for legacy OS X systems:
R-3.6.3.nn.pkg (signed) SHA1-hash: c462c9b1f9b45d778f05b8d9aa25a9123b3557c4 (ca. 77MB)	R 3.6.3 binary for OS X 10.11 (El Capitan) and higher, signed package. Contains R 3.6.3 framework, R.app GUI 1.70 in 64-bit for Intel Macs, Tcl/Tk 8.6.6 X11 libraries and Texinfo 5.2. The latter two components are optional and can be ommitted when choosing 'custom install', they are only needed if you want to use the `tcltk` R package or build package documentation from sources.
R-3.3.3.pkg MD5-hash: 893ba010f303e666e19f86e4800f1fbf SHA1-hash: 5ae71b000b15805f95f38c08c45972d51ce3d027 (ca. 71MB)	R 3.3.3 binary for Mac OS X 10.9 (Mavericks) and higher, signed package. Contains R 3.3.3 framework, R.app GUI 1.69 in 64-bit for Intel Macs, Tcl/Tk 8.6.0 X11 libraries and Texinfo 5.2. The latter two components are optional and can be ommitted when choosing 'custom install', it is only needed if you want to use the `tcltk` R package or build package documentation from sources. Note: the use of X11 (including `tcltk`) requires XQuartz to be installed since it is no longer part of OS X. Always re-install XQuartz when upgrading your OS X to a new major version.
R-3.2.1-snowleopard.pkg MD5-hash: 58fe9d01314d9cb75ff80ccfb914fd65 SHA1-hash: be6e91db12bac22a324f0cb51c7efa9063ece0d0 (ca. 68MB)	R 3.2.1 legacy binary for Mac OS X 10.6 (Snow Leopard) - 10.8 (Mountain Lion), signed package. Contains R 3.2.1 framework, R.app GUI 1.66 in 64-bit for Intel Macs. This package contains the R framework, 64-bit GUI (R.app), Tcl/Tk 8.6.0 X11 libraries and Texinfop 5.2. GNU Fortran is NOT included (needed if you want to compile packages from sources that contain FORTRAN code) please see the tools directory. NOTE: the binary support for OS X before Mavericks is being phased out, we do not expect further releases!

The new R.app Cocoa GUI has been written by Simon Urbanek and Stefano Iacus with contributions from many developers and translators world-wide, see 'About R' in the GUI.

Subdirectories:

tools	Additional tools necessary for building R for Mac OS X: Universal GNU Fortran compiler for Mac OS X (see R for Mac tools page for details).
base	Binaries of R builds for macOS 10.13 or higher (High Sierra)
contrib	Binaries of package builds for macOS 10.13 or higher (High Sierra)
el-capitan	Binaries of package builds for OS X 10.11 or higher (El Capitan build)
mavericks	Binaries of package builds for Mac OS X 10.9 or higher (Mavericks build)
old	Previously released R versions for Mac OS X

You may also want to read the R FAQ and R for Mac OS X FAQ. For discussion of Mac-related topics and reporting Mac-specific bugs, please use the R-SIG-Mac mailing list.

Information, tools and most recent daily builds of the R GUI, R-patched and R-devel can be found at http://mac.R-project.org/. Please visit that page especially during beta stages to help us test the Mac OS X binaries before final release!

Package maintainers should visit CRAN check summary page to see whether their package is compatible with the current build of R for Mac OS X.

Binary libraries for dependencies not present here are available from http://mac.R-project.org/libs and corresponding sources at http://mac.R-project.org/src.

Last modified: 2021/03/31, by Simon Urbanek

A free and open-source general purpose multiple sequence alignment program that enables you to perform profile alignments or phylogenetic trees

What's new in ClustalX 2.1:

Fixed bug 196 'clustalx: user feedback about use of secondary structure printed to console' - secondary structure is now used if specified in Alignment -> Alignment Parameters -> Secondary Structure Parameters UserParameters->getGui() should be used when ClustalW code needs to know if a function has been called from ClustalX
Fixed bug 204 'Nexus alignment format contain invalid line' - the amino acid alphabet line has been removed
Missing/corrupted file names in ClustalX status messages have been fixed
Fixed bug 175 'msf/pileup files cannot be read if sequences names are all numbers' - this happened if a line such as 528244 .......... .......... .......... .......... .......... was present in the first block of the file

Read the full changelog

ClustalX is a streamlined OS X utility that provides the necessary tools to align DNA or protein sequences from within a user-friendly interface or a Terminal window.

ClustalX comes with support for numerous input formats, such as GDE, FASTA, NBRF/PIR, GCG9 RSF, Clustal, GCC/MSF and EMBL/Swiss-Prot.

In order to use ClustalX, you have to place each sequence in one file and arrange them one after another.

ClustalX's intuitive interface enables you to perform profile alignments, phylogenetic trees and multiple alignment in just a few easy steps.

From the Edit menu you can easily search for a String, remove gaps, clear sequences or range selections and switch between profiles.

By accessing the Alignment menu, you can easily align the sequences to the desired profile and open the Output Format Option window.

ClustalX also allows you to export to the NEXUS, Clustral, GDE, GCG/MSF and NBRF/PIR format.

In addition, ClustalX enables its users to choose between existing color sets or load a color parameter file with just a mouse click.

On top of that, users who are more comfortable performing all aforementioned tasks from a Terminal window, can download and use ClustalW.

Users that are interested in more advanced features like using secondary structures for profile alignment can use the 'Using ClustalX for multiple sequence' tutorial created by by Jarno Tuimala.

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